Difference between revisions of "Wubrowse wiki"
From wubrowse wiki
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## Numerical [[bedGraph]], [[bigWig]], [[matplot]] | ## Numerical [[bedGraph]], [[bigWig]], [[matplot]] | ||
## Categorical [[categorical]] | ## Categorical [[categorical]] | ||
| − | ## Annotation [[simple bed|bed]], [[bigBed]], [[hammock]], [[genome alignment]], [[long-range]], [[HiC]] | + | ## Annotation [[simple bed|bed]], [[bigBed]], [[hammock]], [[genome alignment]], [[long-range]], [[HiC]], [[Cool]] |
## Map [[categoricalMatrix]] | ## Map [[categoricalMatrix]] | ||
## Read alignment [[BAM]] | ## Read alignment [[BAM]] | ||
Revision as of 11:15, 27 September 2017
Welcome to the Wubrowse Wiki, the handbook of WashU EpiGenome Browser
HOW-TOs
- Track format
- Numerical bedGraph, bigWig, matplot
- Categorical categorical
- Annotation bed, bigBed, hammock, genome alignment, long-range, HiC, Cool
- Map categoricalMatrix
- Read alignment BAM
- Misc methylC track, quantitativeCategorySeries
- Datahub
- Track Hosting
- URL parameters
- Metadata
- Gallery
- Instructions for installing a local browser and downloading track files
- Version History
- Frequently Asked Questions
Address Book
- Public http://epigenomegateway.wustl.edu/browser
- Test http://epgg-test.wustl.edu/browser
- Community
- Google+ http://egg.wustl.edu/+
- Facebook https://www.facebook.com/WashUEpiGenomeBrowser
- Mailing list
- epigenome[AT]lists.genetics.wustl.edu (replace [AT] with @)
- Issue tracker:
- https://github.com/epgg
- Users are encourage to submit issues on our github repository about code, metadata, configuration files, scripts etc.
- (archived) http://epgg-test.wustl.edu/redmine/projects/washugb
- https://github.com/epgg
- Source code
- List of publications
- The Team
