Wubrowse wiki

Welcome to the Wubrowse Wiki, the handbook of WashU EpiGenome Browser

• The documentation on this wiki is for the legacy browser: http://epigenomegateway.wustl.edu/legacy/

HOW-TOs

1. Track format
   1. Numerical bedGraph, bigWig, matplot
   2. Categorical categorical
   3. Annotation bed, bigBed, hammock, genome alignment, long-range, HiC, Cool
   4. Map categoricalMatrix
   5. Read alignment BAM
   6. Misc methylC track, quantitativeCategorySeries, Calling card
2. Datahub
3. Track Hosting
4. URL parameters
5. Metadata
6. Gallery
7. Instructions for installing a local browser and downloading track files
8. Docker
9. Version History
10. Frequently Asked Questions

Address Book

• Public http://epigenomegateway.wustl.edu/legacy/
• Test http://epgg-test.wustl.edu/browser
• Community
  • Google+ http://egg.wustl.edu/+
  • Facebook https://www.facebook.com/WashUEpiGenomeBrowser
• Twitter
  • https://twitter.com/wuepgg
  • (archived) https://twitter.com/WashUGBrowser
• Mailing list
  • epigenome[AT]lists.genetics.wustl.edu (replace [AT] with @)
• Issue tracker:
  • https://github.com/epgg
    • Users are encourage to submit issues on our github repository about code, metadata, configuration files, scripts etc.
  • (archived) http://epgg-test.wustl.edu/redmine/projects/washugb
• Source code
  • https://github.com/epgg
  • (archived) http://epigenomegateway.wustl.edu/info/source/
  • (archived) https://www.dropbox.com/sh/kyosquasf4rr4f4/AACHBB5oDhxwDh-wYZ1BPIAUa
• List of publications
• The Team