V42: bigWig and bigBed support with libBigWig

From wubrowse wiki
Jump to: navigation, search

In version 42 we are using libBigWig instead of Kent source to process bigWig and bigBed tracks.

download libBigWig

  • get the latest code from github
git clone https://github.com/dpryan79/libBigWig.git
  • type make to compile the code
make

add support to browser

  • get the latest browser code from github
  • soft link or copy/move the libBigWig folder to the cgi-bin/query folder
  • in the cgi-bin/query folder, type make
  • two files named querybw and querybb will be generated, move the to Apache cgi-bin folder
cp querybw querybb /usr/lib/cgi-bin/